October 31, 2006

AMBER config.h for g95 on intel mac

By mjhsieh at 01:33 AM | PermaLink

October 16, 2006

Identifying salt bridges from a trajectory using ptraj

By mjhsieh at 10:45 AM | PermaLink

September 15, 2006

parm7/rst7 for VMD 1.8

By mjhsieh at 01:39 AM | PermaLink

August 24, 2006

AMBER residues

By mjhsieh at 07:07 PM | PermaLink

March 08, 2006

Displaying Electrostatic Surface with AMBER/PBSA (AMBER 9) and PyMol

By mjhsieh at 01:06 PM | FollowUp (2) | PermaLink

November 21, 2005

Project PBSA Surface Map for AMBER

By mjhsieh at 10:20 PM | PermaLink

April 29, 2005

PyMOLX11Hybrid (v0.97) hacks

By mjhsieh at 03:22 AM | PermaLink

December 11, 2004

Eye3D and VMD

By mjhsieh at 04:27 PM | FollowUp (0) | TrackBack (1) | PermaLink

June 06, 2004

A Structural Prediction Project

By mjhsieh at 11:50 AM | PermaLink

May 12, 2004

Simulation / Quicktime Test

By mjhsieh at 04:55 AM | TrackBack (0) | PermaLink

May 06, 2004

Porting pmemd on MacOS X

By mjhsieh at 02:15 AM | FollowUp (3) | TrackBack (0) | PermaLink

March 08, 2004

Customized xleap

By mjhsieh at 04:34 AM | PermaLink

jac/gb_mb benchmark on AMD Opteron

By mjhsieh at 04:09 AM | FollowUp (1) | PermaLink

March 04, 2004

pb/amber benchmark on AMD Opteron

By mjhsieh at 05:55 PM | PermaLink

March 02, 2004

VMD Testimonial

By mjhsieh at 10:29 PM | FollowUp (0) | PermaLink

February 22, 2004

Compiling MD Display in MacOS X 10.3

By mjhsieh at 02:22 AM | PermaLink

October 24, 2003

Measuring RMSD of molecular structures

By mjhsieh at 08:18 PM | FollowUp (4) | PermaLink

August 13, 2003

Is the guiding force derived from free energy?

By mjhsieh at 01:48 AM | PermaLink

July 12, 2003

non-bonding force

By mjhsieh at 06:51 PM | FollowUp (0) | TrackBack (0) | PermaLink

July 10, 2003

Now you can display InsightII™ from SGI to a Mac!!!

By mjhsieh at 07:17 AM | FollowUp (17) | PermaLink

June 08, 2003

Acronym: charmm

By mjhsieh at 07:30 PM | PermaLink

June 03, 2003

Charmm

By mjhsieh at 01:23 PM | FollowUp (2) | PermaLink

May 28, 2003

Refinement of NMR Structures

By mjhsieh at 02:11 AM | FollowUp (1) | PermaLink

May 19, 2003

VMD & B factor coloring

By mjhsieh at 11:20 PM | TrackBack (0) | PermaLink

February 09, 2003

Converting AMBER to GROMACS input file !

By mjhsieh at 04:18 AM | TrackBack (0) | PermaLink

Processing Molecular Dynamics Calculation Output with Perl

By mjhsieh at 04:03 AM | PermaLink

PERL: Residue renumbering

By mjhsieh at 03:18 AM | PermaLink

PERL: converting MSI pdb files to Amber

By mjhsieh at 02:59 AM | FollowUp (0) | PermaLink

February 01, 2003

Better to keep codes updated

By mjhsieh at 12:14 AM | FollowUp (1) | TrackBack (0) | PermaLink

January 30, 2003

iMol: molecular viewer

By mjhsieh at 07:08 PM | FollowUp (0) | TrackBack (0) | PermaLink

checkoverlap Using ptraj

By mjhsieh at 04:51 PM | FollowUp (0) | PermaLink

January 23, 2003

Minimization

By mjhsieh at 03:35 AM | FollowUp (0) | PermaLink

January 21, 2003

Restart MD Under AMBER

By mjhsieh at 12:41 PM | FollowUp (0) | TrackBack (0) | PermaLink

Input Data Under AMBER

By mjhsieh at 02:40 AM | FollowUp (0) | PermaLink

Molecular Dynamics Using AMBER

By mjhsieh at 12:30 AM | FollowUp (2) | TrackBack (0) | PermaLink

January 20, 2003

Structures Refinement

By mjhsieh at 12:37 AM | FollowUp (0) | TrackBack (0) | PermaLink

January 16, 2003

SANDER configuration variables

By mjhsieh at 01:23 PM | PermaLink

December 10, 2002

VMD 1.8 Released

By mjhsieh at 12:04 AM | PermaLink

December 09, 2002

Explicit Water PME Simulation

By mjhsieh at 01:07 AM | PermaLink

December 07, 2002

3D Image of Structure

By mjhsieh at 10:09 PM | PermaLink

December 06, 2002

Leap and SSbonds

By mjhsieh at 05:05 PM | PermaLink